Lama, C., Love, C.R., Le, H.N., Lama, J. and Dauwalder, B., 2021. The nuclear receptor DHR3/Hr46 is required in the blood brain barrier of mature males for courtship. bioRxiv.

Chopra, S., Moroni, M., Martello, S., Bylicky, M., May, J., Hritzo, B., MacMillan, L., Coleman, C.N. and Aryankalayil, M.J., 2020. Gene Expression Profiles from Heart, Lung and Liver Samples of Total-Body-Irradiated Minipigs: Implications for Predicting Radiation-Induced Tissue Toxicity. Radiation Research, 194(4), pp.411-430.

Khan, N.M., Clifton, K.B., Lorenzo, J., Hansen, M.F. and Drissi, H., 2020. Comparative transcriptomic analysis identifies distinct molecular signatures and regulatory networks of chondroclasts and osteoclasts. Arthritis Research & Therapy, 22(1), pp.1-14.

Pollock, K.E., Talton, O.O. and Schulz, L.C., 2020. Morphology and gene expression in mouse placentas lacking leptin receptors. Biochemical and biophysical research communications, 528(2), pp.336-342.

Sell, S.L., Boone, D.R., Weisz, H.A., Cardenas, C., Willey, H.E., Bolding, I.J., Micci, M.A., Falduto, M.T., Torres, K.E., DeWitt, D.S. and Prough, D.S., 2019. MicroRNA profiling identifies a novel compound with antidepressant properties. PloS one, 14(8), p.e0221163.

Boone, D.R., Weisz, H.A., Willey, H.E., Torres, K.E., Falduto, M.T., Sinha, M., Spratt, H., Bolding, I.J., Johnson, K.M., Parsley, M.A. and DeWitt, D.S., 2019. Traumatic brain injury induces long-lasting changes in immune and regenerative signaling. PloS one, 14(4), p.e0214741.

Shin, S.D., Shin, A., Mayagoitia, K., Wilson, C.G., Bellinger, D.L. and Soriano, S., 2019. Interferon downstream signaling is activated early in pre-symptomatic Niemann-Pick disease type C. Neuroscience letters, 706, pp.43-50.

Goyal, D. and Goyal, R., 2019. Angiogenic transformation in human brain micro endothelial cells: whole genome DNA methylation and transcriptomic analysis. Frontiers in physiology, 10, p.1502.

Shin, S.D., Shin, A., Mayagoitia, K., Siebold, L., Rubini, M., Wilson, C.G., Bellinger, D.L. and Soriano, S., 2019. Loss of amyloid precursor protein exacerbates early inflammation in Niemann-Pick disease type C. Journal of neuroinflammation, 16(1), pp.1-15.

Aryankalayil, M.J., Chopra, S., Makinde, A., Eke, I., Levin, J., Shankavaram, U., MacMillan, L., Vanpouille-Box, C., Demaria, S. and Coleman, C.N., 2018. Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model. Biomarkers, 23(7), pp.689-703.

Goyal, D., & Goyal, R. (2018). Developmental Maturation and Alpha-1 Adrenergic Receptors-Mediated Gene Expression Changes in Ovine Middle Cerebral Arteries. Scientific reports, 8(1), 1772.

Boone, D. R., Weisz, H. A., Sell, S. L., & Hellmich, H. L. (2018). Laser Capture Microdissection in Traumatic Brain Injury Research: Obtaining Hippocampal Subregions and Pools of Injured Neurons for Genomic Analyses. In Laser Capture Microdissection (pp. 235-245). Humana Press, New York, NY.

Gongol, B., Marin, T. L., Jeppson, J. D., Mayagoitia, K., Shin, S., Sanchez, N., … & Soriano, S. (2017). Cellular hormetic response to 27-hydroxycholesterol promotes neuroprotection through AICD induction of MAST4 abundance and kinase activity. Scientific Reports, 7(1), 13898.

Boone, D.R., Leek, J.M., Falduto, M.T., Torres, K.E., Sell, S.L., Parsley, M.A., Cowart, J.C., Uchida, T., Micci, M.A., DeWitt, D.S. and Prough, D.S., 2017. Effects of AAV-mediated knockdown of nNOS and GPx-1 gene expression in rat hippocampus after traumatic brain injury. PloS one, 12(10), p.e0185943.

Luan, L., Patil, N.K., Guo, Y., Hernandez, A., Bohannon, J.K., Fensterheim, B.A., Wang, J., Xu, Y., Enkhbaatar, P., Stark, R. and Sherwood, E.R., 2017. Comparative Transcriptome Profiles of Human Blood in Response to the Toll-like Receptor 4 Ligands Lipopolysaccharide and Monophosphoryl Lipid A. Scientific Reports, 7.

Lazarova, D.L. and Bordonaro, M., 2017. p300 Knockout Promotes Butyrate Resistance. Journal of Cancer, 8(17), pp.3405-3409.

Mata-Greenwood, E., Goyal, D. and Goyal, R., 2017. Comparative and Experimental Studies on the Genes Altered by Chronic Hypoxia in Human Brain Microendothelial Cells. Frontiers in Physiology, 8.

Liu, Z., Lam, N., Wang, E., Virden, R.A., Pawel, B., Attiyeh, E.F., Maris, J.M. and Thiele, C.J., 2017. Identification of CASZ1 NES reveals potential mechanisms for loss of CASZ1 tumor suppressor activity in neuroblastoma. Oncogene, 36(1), pp.97-109.

Boone, D.K., Weisz, H.A., Bi, M., Falduto, M.T., Torres, K.E., Willey, H.E., Volsko, C.M., Kumar, A.M., Micci, M.A., Dewitt, D.S. and Prough, D.S., 2017. Evidence linking microRNA suppression of essential prosurvival genes with hippocampal cell death after traumatic brain injury. Scientific Reports, 7.

Gogas, B. D., Benham, J. J., Hsu, S., Sheehy, A., Lefer, D. J., Goodchild, T. T., … & Joshi, U. (2016). Vasomotor function comparative assessment at 1 and 2 years following implantation of the Absorb everolimus-eluting bioresorbable vascular scaffold and the Xience V everolimus-eluting metallic stent in porcine coronary arteries: insights from in vivo angiography, ex vivo assessment, and gene analysis at the stented/scaffolded segments and the proximal and distal edges. JACC: Cardiovascular Interventions, 9(7), 728-741.

Goyal, R., Goyal, D., Longo, L. D., & Clyman, R. I. (2016). Microarray gene expression analysis in ovine ductus arteriosus during fetal development and birth transition. Pediatric Research, 80(4), 610-618.

Bordonaro, M., & Lazarova, D. L. (2016). Determination of the Role of CBP-and p300-Mediated Wnt Signaling on Colonic Cells. JMIR research protocols, 5(2).

Kirby, T. J., Walton, R. G., Finlin, B., Zhu, B., Unal, R., Rasouli, N., … & Kern, P. A. (2016). Integrative mRNA-microRNA analyses reveal novel interactions related to insulin sensitivity in human adipose tissue. Physiological genomics, 48(2), 145-153.

Enkhbaatar, P., Nelson, C., Salsbury, J. R., Carmical, J. R., Torres, K. E., Herndon, D., … & Sherwood, E. R. (2015). Comparison of Gene Expression by Sheep and Human Blood Stimulated with the TLR4 Agonists Lipopolysaccharide and Monophosphoryl Lipid A. PloS one, 10(12), e0144345.

Dobyns, A. E., Goyal, R., Carpenter, L. G., Freeman, T. C., Longo, L. D., & Yellon, S. M. (2015). Macrophage Gene Expression Associated with Remodeling of the Prepartum Rat Cervix: Microarray and Pathway Analyses. PloS one, 10(3).

Harper, J. L., Caesar, G. A., Pennington, K. A., Davis, J. W., & Schulz, L. C. (2015). Placental changes caused by food restriction during early pregnancy in mice are reversible. Reproduction, 150 (3) 165-172.

Choudhary, D., Hegde, P., Voznesensky, O., Choudhary, S., Kopsiaftis, S., Claffey, K. P., … & Taylor, J. A. (2015) Increased expression of L-selectin (CD62L) in high-grade urothelial carcinoma: A potential marker for metastatic disease. In Urologic Oncology: Seminars and Original Investigations. Elsevier.

Peng, X., Li, W., Johnson, W. D., Torres, K. E., & McCormick, D. L. (2015). Overexpression of lipocalins and pro-inflammatory chemokines and altered methylation of PTGS2 and APC2 in oral squamous cell carcinomas induced in rats by 4-nitroquinoline-1-oxide. PloS one, 10(1), e0116285.

Mehta RG, Hawthorne M, Mehta RR, Torres KEO, Peng X, et al. (2014) Differential Roles of ERα and ERβ in Normal and Neoplastic Development in the Mouse Mammary Gland. PLoS ONE 9(11): e113175.

Bresee, J., Bond, C. M., Worthington, R. J., Smith, C. A., Gifford, J. C., Simpson, C. A., … & Feldheim, D. L. (2014). Nanoscale Structure–Activity Relationships, Mode of Action, and Biocompatibility of Gold Nanoparticle Antibiotics. Journal of the American Chemical Society, 136(14), 5295-5300.

Goyal, R., & Longo, L. D. (2014). Acclimatization to long-term hypoxia: gene expression in ovine carotid arteries. Physiological genomics, 46(19), 725-734.

Cardone, M., Dzutsev, A. K., Li, H., Riteau, N., Gerosa, F., Shenderov, K., … & Trinchieri, G. (2014). Interleukin-1 and Interferon-γ Orchestrate β-Glucan-Activated Human Dendritic Cell Programming via IκB-ζ Modulation. PloS one, 9(12), e114516.

Lazarova, D. L., Chiaro, C., & Bordonaro, M. (2014). Butyrate induced changes in Wnt-signaling specific gene expression in colorectal cancer cells. BMC research notes, 7(1), 226.

Palayoor, S. T., John-Aryankalayil, M., Makinde, A. Y., Falduto, M. T., Magnuson, S. R., & Coleman, C. N. (2014). Differential Expression of Stress and Immune Response Pathway Transcripts and miRNAs in Normal Human Endothelial Cells Subjected to Fractionated or Single-Dose Radiation. Molecular Cancer Research, 12(7), 1002-1015.

Lazarova, D., Lee, A., Wong, T., Marian, B., Chiaro, C., Rainey, C., & Bordonaro, M. (2014). Modulation of Wnt Activity and Cell Physiology by Butyrate in LT97 Microadenoma Cells. Journal of Cancer, 5(3), 203.

Simone II, Charles B., Molykutty John-Aryankalayil, Sanjeewani T. Palayoor, Adeola Y. Makinde, David Cerna, Michael T. Falduto, Scott R. Magnuson, and C. Norman Coleman. “mRNA Expression Profiles for Prostate Cancer following Fractionated Irradiation Are Influenced by p53 Status.” Translational oncology 6, no. 5 (2013): 573-585.

Goyal, R., Van Wickle, J., Goyal, D., Matei, N., & Longo, L. D. (2013). Antenatal maternal long-term hypoxia: acclimatization responses with altered gene expression in ovine fetal carotid arteries. PloS one, 8(12), e82200.

Monteiro, G. A., Delossantos, A. I., Rodriguez, N. L., Patel, P., Franz, M. G., & Wagner, C. T. (2013). Porcine incisional hernia model: Evaluation of biologically derived intact extracellular matrix repairs. Journal of tissue engineering, 4, 2041731413508771.

Brooks, J. M., Su, J., Levy, C., Wang, J. S., Seabrook, T. A., Guido, W., & Fox, M. A. (2013). A molecular mechanism regulating the timing of corticogeniculate innervation. Cell reports, 5(3), 573-581.

Stewart, C. A., Metheny, H., Iida, N., Smith, L., Hanson, M., Steinhagen, F., … & Trinchieri, G. (2013). Interferon-dependent IL-10 production by Tregs limits tumor Th17 inflammation. The Journal of clinical investigation, 123(11), 0-0.

Boone, D. R., Sell, S. L., & Hellmich, H. L. (2013). Laser Capture Microdissection of Enriched Populations of Neurons or Single Neurons for Gene Expression Analysis After Traumatic Brain Injury. Journal of visualized experiments: JoVE, (74).

Telugu, B. P., Adachi, K., Schlitt, J. M., Ezashi, T., Schust, D. J., Roberts, R. M., & Schulz, L. C. (2013). Comparison of extravillous trophoblast cells derived from human embryonic stem cells and from first trimester human placentas. Biochemical and Biophysical Research Communications, 34(7), 536–543. doi:10.1016/j.placenta.2013.03.016

Hellmich, H. L., Rojo, D. R., Micci, M. A., Sell, S. L., Boone, D. R., Crookshanks, J. M., Prough, D. S. (2013). Pathway Analysis Reveals Common Pro-Survival Mechanisms of Metyrapone and Carbenoxolone after Traumatic Brain Injury. PloS one, 8(1), e53230.

Solca, C., Tint, G. S., & Patel, S. B. (2013). Dietary xenosterols lead to infertility and loss of abdominal adipose tissue in sterolin-deficient mice. Journal of Lipid Research, 54(2), 397-409.

Bordonaro, M. (2013). Crosstalk between Wnt Signaling and RNA Processing in Colorectal Cancer. Journal of Cancer, 4(2), 96.

Sherif, Z. A., & Sultan, A. S. (2013). Divergent control of Cav-1 expression in non-cancerous Li-Fraumeni syndrome and human cancer cell lines. Cancer Biology & Therapy, 14(1), 0-1.

Li, H., Bhaskara, A., Megalis, C., & Tortorello, M. L. (2012). Transcriptomic Analysis of Salmonella Desiccation Resistance. Foodborne Pathogens and Disease, 9(12), 1143-1151.

John-Aryankalayil M, Palayoor ST, Makinde AY, Cerna D, Simone CB, Falduto MT, Magnuson SR, Coleman CN. (2012). Fractionated Radiation Alters Oncomir and Tumor Suppressor miRNAs in Human Prostate Cancer Cells. Radiation Research 178:3, 105-117.

Palayoor ST, John-Aryankalayil M, Makinde AY, Cerna D, Falduto MT, Magnuson SR, Coleman CN. Gene expression profile of coronary artery cells treated with nonsteroidal anti-inflammatory drugs reveals off-target effects. Journal of Cardiovascular Pharmacology 2012 59(6), 487–499.

Schulz LC, Schlitt JM, Caesar G, Pennington KA. Leptin and the Placental Response to Maternal Food Restriction During Early Pregnancy. Biology of Reproduction September 19, 2012.

Chiaro C, Lazarova DL, Bordonaro M, Tcf3 and cell cycle factors contribute to butyrate resistance in colorectal cancer cells, Biochemical and Biophysical Research Communications, October 10, 2012

Zou C, La Bonte LR, Pavlov VI, Stahl GL. Murine Hyperglycemic Vasculopathy and Cardiomyopathy: Whole-Genome Gene Expression Analysis Predicts Cellular Targets and Regulatory Networks Influenced by Mannose Binding Lectin. Front Immunol. 3:15, 2012.

Baljinnyam B, Klauzinska M, Saffo S, Callahan R, Rubin JS. Recombinant R-spondin2 and Wnt3a Up- and Down-Regulate Novel Target Genes in C57MG Mouse Mammary Epithelial Cells. PLoS ONE 7(1): e29455, 2012

Cataisson C, Salcedo R, Hakim S, Moffitt BA, Wright L, Yi M, Stephens R, Dai RM, Lyakh L, Schenten D, Yuspa HS, Trinchieri, G.IL-1R–MyD88 signaling in keratinocyte transformation and carcinogenesis. August 20, 2012 // JEM vol. 209 no. 9 1689-1702

Goyal, R., & Longo, L. D. (2012). Gene expression in sheep carotid arteries: major changes with maturational development. Pediatric research, 72(2), 137-146.

Rasouli N, Kern PA, Elbein SC, Sharma NK, Das SK. Improved insulin sensitivity after treatment with PPARγ and PPARα ligands is mediated by genetically modulated transcripts. Pharmacogenetics and Genomics 2012

Roberts RM, Katayama M, Magnuson SR, Falduto MT, Torres KEO. Transcript profiling of individual twin blastomeres derived by splitting two-cell stage murine embryos. Biology of Reproduction 2011 Mar.;84(3):487–494.

Rojo DR, Prough DS, Falduto MT, Boone DR, Micci M-A, Kahrig KM, Crookshanks JM, Jimenez A, Uchida T, Cowart JC, Hawkins BE, Avila M, DeWitt DS, Hellmich HL. Influence of Stochastic Gene Expression on the Cell Survival Rheostat after Traumatic Brain Injury. PLoS ONE 2011 Aug.;6(8):e23111.

Singh R, Su J, Brooks J, Terauchi A, Umemori H, Fox MA. Fibroblast Growth Factor 22 Contributes to the Development of Retinal Nerve Terminals in the Dorsal Lateral Geniculate Nucleus. Front Mol Neurosci. 2011; 4: 61.

Elbein SC, Kern PA, Rasouli N, Yao-Borengasser A, Sharma NK, Das SK. Global gene expression profiles of subcutaneous adipose and muscle from glucose-tolerant, insulin-sensitive, and insulin-resistant individuals matched for BMI. Diabetes 2011 Mar.;60(3):1019–1029.

Su J, Haner CV, Imbery TE, Brooks JM, Morhardt DR, Gorse K, Guido W, Fox MA. Reelin is required for class-specific retinogeniculate targeting. J. Neurosci. 2011 Jan.;31(2):575–586.

Shapshak P, Duncan R, Duran E, Farinetti F, Minagar A, Commins D, Rodriguez H, Chiappelli F, Kangueane P, Levine A. Gene expression for HIV-associated dementia and HIV encephalitis in microdissected neurons 1: preliminary analysis. Neurobehavioral HIV Medicine 2011;3:53–78.

Kirwin SJ, Kanaly ST, Hansen CR, Cairns BJ, Ren M, Edelman JL. Retinal Gene Expression and Visually Evoked Behavior in Diabetic Long Evans Rats. Investigative Ophthalmology & Visual Science 2011 Sep.;52(10):7654–7663.

Liu Z, Yang X, Li Z, McMahon C, Sizer C, Barenboim-Stapleton L, Bliskovsky V, Mock B, Ried T, London WB, Maris J, Khan J, Thiele CJ. CASZ1, a candidate tumor-suppressor gene, suppresses neuroblastoma tumor growth through reprogramming gene expression. Cell Death Differ 2011 Jan.;18(7):1174–1183.

John-Aryankalayil M, Palayoor ST, Cerna D, Simone CB II, Falduto MT, Magnuson SR, Coleman CN. Fractionated Radiation Therapy Can Induce a Molecular Profile for Therapeutic Targeting. Radiation Research 2010 Oct.;174(4):446–458.

Mao J, Zhang X, Sieli PT, Falduto MT, Torres KE, Rosenfeld CS. Contrasting effects of different maternal diets on sexually dimorphic gene expression in the murine placenta. Proceedings of the National Academy of Sciences 2010 Mar.;107(12):5557–5562.

Thompson CL, Wisor JP, Lee CK, Pathak SD, Gerashchenko D, Smith KA, Fischer SR, Kuan CL, Sunkin SM, Ng LL, Lau C, Hawrylycz M, Jones AR, Kilduff TS, Lein ES. Molecular and anatomical signatures of sleep deprivation in the mouse brain. Front Neurosci. 2010;4:165.

Uray KS, Wright Z, Kislitsyna K, Xue H, Cox CS Jr. Nuclear factor-κB activation by edema inhibits intestinal contractile activity. Critical Care Medicine 2010 Mar.;38(3):861–870.

Davis JN, Rogers D, Adams L, Yong T, Jung JS, Cheng B, Fennell K, Borazanci E, Moustafa YW, Sun A, Shi R, Glass J, Mathis JM, Williams BJ, Meyers S. Association of core-binding factor β with the malignant phenotype of prostate and ovarian cancer cells. J. Cell. Physiol. 2010 Dec.;225(3):875–887.

Das SK, Mondal AK, Elbein SC. Distinct gene expression profiles characterize cellular responses to palmitate and oleate. The Journal of Lipid Research 2010 Aug.;51(8):2121–2131.

Mousa SA, Sudha T, Dyskin E, Dier U, Gallati C, Hanko C, Chittur SV, Rebbaa A. Stress resistant human embryonic stem cells as a potential source for the identification of novel cancer stem cell markers. Cancer Letters 2010 Mar.;289(2):208–216.

Murillo G, Peng X, Torres KEO, Mehta RG. Deguelin Inhibits Growth of Breast Cancer Cells by Modulating the Expression of Key Members of the Wnt Signaling Pathway. Cancer Prevention Research 2009 Nov.;2(11):942–950.

John-Aryankalayil M, Palayoor ST, Cerna D, Falduto MT, Magnuson SR, Coleman CN. NS-398, ibuprofen, and cyclooxygenase-2 RNA interference produce significantly different gene expression profiles in prostate cancer cells. Mol Cancer Ther 2009 Jan.;8(1):261–273.

Rush C, Nyara M, Moxon JV, Trollope A, Cullen B, Golledge J. Whole genome expression analysis within the angiotensin II-apolipoprotein E deficient mouse model of abdominal aortic aneurysm. BMC Genomics 2009 10:566 2009;10:298.

Zollanvari A, Cunningham MJ, Braga-Neto U, Dougherty ER. Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. BMC Bioinformatics 2009;10(Suppl 11):S10.

Straseski JA, Gibson AL, Thomas-Virnig CL, Allen-Hoffmann BL. Oxygen deprivation inhibits basal keratinocyte proliferation in a model of human skin and induces regio-specific changes in the distribution of epidermal adherens junction proteins, aquaporin-3, and glycogen. Wound Repair and Regeneration 2009 Jul.;17(4):606–616.

Furusawa T, Ko J-H, Birger Y, Bustin M. Expression of nucleosomal protein HMGN1 in the cycling mouse hair follicle. Gene Expression Patterns 2009 Jun.;9(5):289–295.

O-Sullivan I, Chopra A, Carr J, Kim TS, Cohen EP. Immunity to Growth Factor Receptor-Bound Protein 10, a Signal Transduction Molecule, Inhibits the Growth of Breast Cancer in Mice. Cancer Res 2008 Apr.;68(7):2463–2470.

DeSteno DA, Schmauss C. Induction of early growth response gene 2 expression in the forebrain of mice performing an attention-set-shifting task. Neuroscience 2008 Mar.;152(2):417–428.

Wang R, Wan Q, Kozhaya L, Fujii H, Unutmaz D. Identification of a Regulatory T Cell Specific Cell Surface Molecule that Mediates Suppressive Signals and Induces Foxp3 Expression. PLoS ONE 2008 Jul.;3(7):e2705.

Popper P, Winkler J, Erbe C, Lerchgaggl A, Siebeneich W, Wackym P. Distribution of two-pore-domain potassium channels in the adult rat vestibular periphery. Hearing Research 2008 Dec.;246(1-2):1–8.

Mager GM, Ward RM, Srinivasan R, Jang SW, Wrabetz L, Svaren J. Active Gene Repression by the Egr2{middle dot}NAB Complex during Peripheral Nerve Myelination. Journal of Biological Chemistry 2008 Apr.;283(26):18187–18197.

Scaffidi P, Misteli T. Lamin A-dependent misregulation of adult stem cells associated with accelerated ageing. Nat Cell Biol 2008 Mar.;10(4):452–459.

O-Sullivan I, Chopra A, Kim TS, Magnuson S, Falduto MT, Huang J, Cohen EP. New strategy for the identification of squamous carcinoma antigens that induce therapeutic immune responses in tumor-bearing mice. Cancer Gene Ther 2007 Feb.;14(4):389–398.

Friedland DR, Eernisse R, Popper P. Potassium channel gene expression in the rat cochlear nucleus. Hearing Research 2007 Jun.;228(1-2):31–43.

Lu T, Tian L, Han Y, Vogelbaum M, Stark GR. Dose-dependent cross-talk between the transforming growth factor-β and interleukin-1 signaling pathways. Proceedings of the National Academy of Sciences 2007;104(11):4365.

Shultz D, Fuller J, Yang Y, Sizemore N, Rani M, Stark GR. Activation of a Subset of Genes by IFN-γ Requires IKKβ but Not Interferon-Dependent Activation of NF-κB Journal of Interferon & Cytokine Research. October 2007, 27(10): 875-884

Amin ARMR, Thakur VS, Paul RK, Feng GS, Qu CK, Mukhtar H, Agarwal ML. SHP-2 tyrosine phosphatase inhibits p73-dependent apoptosis and expression of a subset of p53 target genes induced by EGCG. Proceedings of the National Academy of Sciences 2007 Mar.;104(13):5419–5424.

Singh AM, Hamazaki T, Hankowski KE, Terada N. A Heterogeneous Expression Pattern for Nanog in Embryonic Stem Cells. Stem Cells 2007 Oct.;25(10):2534–2542.

Yang J, Liao X, Agarwal MK, Barnes L, Auron PE, Stark GR. Unphosphorylated STAT3 accumulates in response to IL-6 and activates transcription by binding to NF B. Genes & Development 2007 Jun.;21(11):1396–1408.

Shi, L., Shi, L., Reid, L. H., Jones, W. D., Shippy, R., Warrington, J. A., … & Corton, J. C. (2006). The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements. Nature biotechnology, 24(9), 1151-1161.

Friedland DR, Popper P, Eernisse R, Cioffi JA. Differentially expressed genes in the rat cochlear nucleus. Neuroscience 2006 Oct.;142(3):753–768.

Friedland DR, Popper P, Eernisse R, Ringger B, Cioffi JA. Differential expression of cytoskeletal genes in the cochlear nucleus. Anat. Rec. 2006;288A(4):447–465.

Cunningham, M. J., Magnuson, S. R., & Falduto, M. T. (2005). Gene expression profiling of nanoscale materials using a systems biology approach. The Toxicologist, 84(9).

Cristobal R, Wackym P, Cioffi J, Erbe C, Roche J, Popper P. Assessment of differential gene expression in vestibular epithelial cell types using microarray analysis. Molecular Brain Research 2005 Jan.;133(1):19–36.

Kennedy, D. R., Garcia, J. M., Magnuson, S. R., Falduto, M. T., Capra, B. A., Eidson, K. A., … & Hellmich, H. L. (2004, September). Global gene chip analysis shows a dramatic suppression of gene expression in injured rat hippocampal neurons. In Journal of Neurotrauma (Vol. 21, No. 9, pp. 1300-1300). 140

Abstracts, Conference presentations, and other publications

Van Holla DB, Torres KE, Magnuson SR, Pusateri GM, Falduto MT (2017) Differentiating Bipolar Disorder from Major Depressive Disorder with a Blood Test. American Psychiatric Association Annual Meeting 2017.

Magnuson, S. R., Falduto, M. T., Torres, K. E., & Gomez, M. A. (2016). Blood Bioprofiles For The Diagnosis of Intestinal Metaplasia and Gastric Cancer. Gastroenterology, 150(4), S609-S610.

Choudhary, D., Hegde, P., Choudhary, S., Claffey, K., Srivastava, P., Pilbeam, C. C., & Taylor, J. A. (2014). Increased expression of L-selectin (CD62L) in high grade bladder cancer: a potential biomarker for lymph node metastasis. Cancer Research, 74(19 Supplement), 53-53.

Lazarova, D. L., Chiaro, C., Wong, T., & Bordonaro, M. (2013). Abstract A65: Characterization of CBP/p300-mediated butyrate-induced Wnt activity in colonic microadenoma cells. Molecular Cancer Therapeutics, 12(11 Supplement), A65-A65.

Benham, J., Hsu, S., Panchal, D., Goodchild, T., Bhushan, S., Lefer, D., Perkins, L., Sheehy, A., Lambert, B., Cox, D., Rapoza, R. (2013). Preclinical evaluation of vasomotion at 12 months in porcine coronary arteries implanted with a bioresorbable vascular scaffold. EuroPCR2013 poster BVS-05467

Aryankalayil MJ, Palayoor ST, Cerna D, Falduto M, Magnuson S, Coleman N. Microarray analysis of radiation-induced genes in PC3 and DU 145 cells after single (10 Gy) and fractionated (1 Gy and 2 Gy) dose irradiation. San Francisco Radiation Oncology Conference 1, 2008.

Rojo DR, PhD, Falduto MT, PhD, Prough DS, MD, DeWitt DS, PhD, Hellmich HL, PhD. Molecular Signature of Neuroprotective Effects of Metyrapone and Carbenoxolone. ASA Abstracts 1, 2008.

Cunningham M, Shah M, Lema C, Magnuson S, Falduto M, Balzano L, Resasco D. An OMICs Approach for Assessing the Safety of Single-Walled Carbon Nanotubes in Human Skin and Lung Cells. Nanotech Vol. 2. Technical Proceedings of the 2007 NSTI Nanotechnology Conference and Trade Show, 2007.

Cunningham M, MJ, Magnuson S, SR, Falduto M, MT, Balzano L, L, Resasco D, DE. Assessing the Safety of Nanoscale Materials using a Systems Biology Approach. Nanotechnology Environmental and Health Impacts, 2005

Masatomo, M. Mehrotra, L. G. Raisz, C. Pilbeam. Five Minutes of Fluid Shear Stress Is Sufficient to Induce Cyclooxygenase-2 in MC3T3-E1 CellsS. ASBMR 26th Annual Meeting SA001–SA589, 2011.

Hicks MP, Olive MF. Whole genome transcriptional profiling of the mouse frontal cortex following repeated acamprosate administration. Proceedings of the 2nd WSEAS International Conference on Biomedical Electronics and Biomedical Informatics 180–183, 2009.

Ajami A. Compounds for treating inflammatory disorders, demyelinating disorders and cancers. United States Patent Application US20080108641, 2008.

Blanton MG. Genomic effects of the mGlu5 antagonists MPEP and MTEP. Society for Neuroscience Abstracts 1, 2008.

Cutaneous wound therapy: A role for therapeutic skin substitutes. Angela L. F. Gibson, The University of Wisconsin – Madison, 2007.

Shultz D. The role of IKKβ in interferon-γ-dependent signaling. Case Western Reserve University, Doctoral Thesis, 2007.

Mayo JL. Characterization of a novel nuclear variant of Bmp2, and coordinate regulation of COL11A2 and COL27A1 by the transcription factor Lc-Maf. Brigham Young University, Doctoral Thesis, 2007.

Ajami A. Compounds for treating autoimmune and demyelinating diseases. United States Patent Application US20060189546, 2006.

Cole J, Paterson J, Grieshaber C, Ajami A. Modification of gene expression in HT-29 and H-116 colon cell lines induced by symadex: A novel anticancer agent. AACR Meeting Abstracts (1):13, 2005.

Cunningham, M. J., Magnuson, S. R., Falduto, M. T., Balzano, L., & Resasco, D. E. (2005, March). Investigating the toxicity of nanoscale materials by gene expression profiling: A systems biology approach. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY (Vol. 229, pp. U337-U337). 1155 16TH ST, NW, WASHINGTON, DC 20036 USA: AMER CHEMICAL SOC.

Bordonaro, M., & Lazarova, D. L. (2016). Determination of the Role of CBP-and p300-Mediated Wnt Signaling on Colonic Cells. JMIR research protocols, 5(2).

Liu, Z., Lam, N., Wang, E., Virden, R. A., Pawel, B., Attiyeh, E. F., … & Thiele, C. J. (2016). Identification of CASZ1 NES reveals potential mechanisms for loss of CASZ1 tumor suppressor activity in neuroblastoma. Oncogene.

Mehta RG, Hawthorne M, Mehta RR, Torres KEO, Peng X, et al. (2014) Differential Roles of ERα and ERβ in Normal and Neoplastic Development in the Mouse Mammary Gland. PLoS ONE 9(11): e113175.

Goyal, R., & Longo, L. D. (2014). Acclimatization to long-term hypoxia: gene expression in ovine carotid arteries. Physiological genomics, 46(19), 725-734.

Lazarova, D. L., Chiaro, C., & Bordonaro, M. (2014). Butyrate induced changes in Wnt- signaling specific gene expression in colorectal cancer cells. BMC research notes, 7(1), 226.

Solca, C., Tint, G. S., & Patel, S. B. (2013). Dietary xenosterols lead to infertility and loss of abdominal adipose tissue in sterolin-deficient mice. Journal of Lipid Research, 54(2), 397-409.

Bordonaro, M. (2013). Crosstalk between Wnt Signaling and RNA Processing in Colorectal Cancer. Journal of Cancer, 4(2), 96.

Sherif, Z. A., & Sultan, A. S. (2013). Divergent control of Cav-1 expression in non-cancerous Li-Fraumeni syndrome and human cancer cell lines. Cancer Biology & Therapy, 14(1), 0-1.

Li, H., Bhaskara, A., Megalis, C., & Tortorello, M. L. (2012). Transcriptomic Analysis of Salmonella Desiccation Resistance. Foodborne Pathogens and Disease, 9(12), 1143-1151.

Schulz LC, Schlitt JM, Caesar G, Pennington KA. Leptin and the Placental Response to Maternal Food Restriction During Early Pregnancy. Biology of Reproduction September 19, 2012.

Chiaro C, Lazarova DL, Bordonaro M, Tcf3 and cell cycle factors contribute to butyrate resistance in colorectal cancer cells, Biochemical and Biophysical Research Communications, October 10, 2012

Cataisson C, Salcedo R, Hakim S, Moffitt BA, Wright L, Yi M, Stephens R, Dai RM, Lyakh L, Schenten D, Yuspa HS, Trinchieri, G. IL-1R–MyD88 signaling in keratinocyte transformation and carcinogenesis. August 20, 2012 // JEM vol. 209 no. 9 1689-1702

Goyal, R., & Longo, L. D. (2012). Gene expression in sheep carotid arteries: major changes with maturational development. Pediatric research, 72(2), 137-146.

Elbein SC, Kern PA, Rasouli N, Yao-Borengasser A, Sharma NK, Das SK. Global gene expression profiles of subcutaneous adipose and muscle from glucose-tolerant, insulin- sensitive, and insulin-resistant individuals matched for BMI. Diabetes 2011 Mar.;60(3): 1019–1029.

Su J, Haner CV, Imbery TE, Brooks JM, Morhardt DR, Gorse K, Guido W, Fox MA. Reelin is required for class-specific retinogeniculate targeting. J. Neurosci. 2011 Jan.; 31(2):575–586.

Shapshak P, Duncan R, Duran E, Farinetti F, Minagar A, Commins D, Rodriguez H, Chi- appelli F, Kangueane P, Levine A. Gene expression for HIV-associated dementia and HIV encephalitis in microdissected neurons 1: preliminary analysis. Neurobehavioral HIV Medicine 2011;3:53–78.

Uray KS, Wright Z, Kislitsyna K, Xue H, Cox CS Jr. Nuclear factor-κB activation by edema inhibits intestinal contractile activity. Critical Care Medicine 2010 Mar.;38(3):861– 870.

Das SK, Mondal AK, Elbein SC. Distinct gene expression profiles characterize cellular responses to palmitate and oleate. The Journal of Lipid Research 2010 Aug.;51(8): 2121–2131.

Rush C, Nyara M, Moxon JV, Trollope A, Cullen B, Golledge J. Whole genome expres- sion analysis within the angiotensin II-apolipoprotein E deficient mouse model of abdominal aortic aneurysm. BMC Genomics 2009 10:566 2009;10:298.

Furusawa T, Ko J-H, Birger Y, Bustin M. Expression of nucleosomal protein HMGN1 in the cycling mouse hair follicle. Gene Expression Patterns 2009 Jun.;9(5):289–295.

O-Sullivan I, Chopra A, Carr J, Kim TS, Cohen EP. Immunity to Growth Factor Receptor- Bound Protein 10, a Signal Transduction Molecule, Inhibits the Growth of Breast Cancer in Mice. Cancer Res 2008 Apr.;68(7):2463–2470.

DeSteno DA, Schmauss C. Induction of early growth response gene 2 expression in the forebrain of mice performing an attention-set-shifting task. Neuroscience 2008 Mar.; 152(2):417–428.

Popper P, Winkler J, Erbe C, Lerchgaggl A, Siebeneich W, Wackym P. Distribution of two-pore-domain potassium channels in the adult rat vestibular periphery. Hearing Research 2008 Dec.;246(1-2):1–8.

Scaffidi P, Misteli T. Lamin A-dependent misregulation of adult stem cells associated with accelerated ageing. Nat Cell Biol 2008 Mar.;10(4):452–459.

Friedland DR, Eernisse R, Popper P. Potassium channel gene expression in the rat cochlear nucleus. Hearing Research 2007 Jun.;228(1-2):31–43.

Singh AM, Hamazaki T, Hankowski KE, Terada N. A Heterogeneous Expression Pattern for Nanog in Embryonic Stem Cells. Stem Cells 2007 Oct.;25(10):2534–2542.

Shi, L., Shi, L., Reid, L. H., Jones, W. D., Shippy, R., Warrington, J. A., … & Corton, J. C. (2006). The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature biotechnology, 24(9), 1151-1161.

Friedland DR, Popper P, Eernisse R, Cioffi JA. Differentially expressed genes in the rat cochlear nucleus. Neuroscience 2006 Oct.;142(3):753–768.

Friedland DR, Popper P, Eernisse R, Ringger B, Cioffi JA. Differential expression of cytoskeletal genes in the cochlear nucleus. Anat. Rec. 2006;288A(4):447–465.

Abstracts, Conference presentations, and other publications

Magnuson, S. R., Falduto, M. T., Torres, K. E., & Gomez, M. A. (2016). Blood Biopmarkers For The Diagnosis of Intestinal Metaplasia and Gastric Cancer. Gastroenterology, 150(4), S609-S610.